PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G241800.1
Common NameB456_002G241800, LOC105787110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 178aa    MW: 18704.9 Da    PI: 5.6838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G241800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182070155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        + ykGVr++  +g+Wv+eIr+p     r  +r++lg+f t+e+Aa a++ a+++l+g
  Gorai.002G241800.1 20 PVYKGVRRRA-NGKWVSEIREP-----RkpTRIWLGTFPTPEMAAIAYDVAALALKG 70
                        68*****887.8*********9.....448************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-122070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-302180IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-212180IPR016177DNA-binding domain
SMARTSM003802.5E-332184IPR001471AP2/ERF domain
PROSITE profilePS5103222.6032178IPR001471AP2/ERF domain
CDDcd000183.10E-312280No hitNo description
PRINTSPR003671.0E-72233IPR001471AP2/ERF domain
PRINTSPR003671.0E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQYNKGSSSG GGSAATGRHP VYKGVRRRAN GKWVSEIREP RKPTRIWLGT FPTPEMAAIA  60
YDVAALALKG RHAELNFPNS AASLPVPAST SPTDIQAAAT SAATALGAAN DALVGSNSPV  120
SAERPSTGND FVDEDMIFDM PNVLVNMAEG MLLSPPRFDH PPPADESGDS ENLWKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141578163ATERF1
3gcc_A1e-141578163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469009.11e-127PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR03e-57ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0D2MB361e-127A0A0D2MB36_G
STRINGGLYMA19G37670.15e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64242546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.17e-48ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]